research

This is a repository for my research, paper reading summaries/reviews, and relevant blog-like posts in markdown.

Readings for Context

  1. Get key highlights:
    1. Box 1 of Current best practices in single‐cell RNA‐seq analysis: a tutorial
    2. Pages 14 - 16 of User Guide - Chromium Single Cell 3’ Reagent Kits V3
    3. Figure 2 of Comparative Analysis of Single-Cell RNA Sequencing Methods
  2. Read more details:
    1. Current best practices in single‐cell RNA‐seq analysis: a tutorial
    2. Comparative Analysis of Single-Cell RNA Sequencing Methods
    3. Massively parallel digital transcriptional profiling of single cells

Relevant Readings by Topic

For single cell RNA sequencing (scRNA-seq):

For comparative analyses of scRNA-seq:

For scRNA-seq analysis pipelines:

For cell trajectory analysis:

For Nanopore sequencing:

For Data Analysis:

For File Formats: