Declarative Programmable Storage
Advisors: Peter Alvaro, Josh Stuart
Clustering for Microbial Source Tracking
Advisor: Alex Dekhtyar
Content, Pipeline, and Annotation Team
Software development using primarily bash, python, SQL server, and MySQL.
Maintain internal tools for annotating small variants called by internal variant calling pipeline. Internal tools leverage 3rd party tools, such as snpEff.
OMS Performance - Scalability Engineering Software development using primarily java, bash, MySQL, and hive.
: Experienced Programming Languages
Python, Java, Bash, Perl, C
: Acquainted Programming Languages
: FASTER-STEAM (October 2017 - Present)
Tech Committee, Mentor
: OutOfOfficeHours (June 2016 - Present)
: Code2040 (June 2016 - September 2016)
: Dublin HS Engineering & Design Academy (August 2014 - June 2016)
Jennifer Yen, et al., A variant by any name
Elo Leung, et al., Protein Sequence Annotation Tool (PSAT)
Aldrin Montana, et al., Ontological Hierarchical Clustering for Library-Based Microbial Source Tracking
Alex Dekhtyar, et al., Teaching Bioinformatics in Concert
Emily Neal, et al., Integrating Molecular Forensics into the Undergraduate Science, Technology, Engineering and Mathematics Curriculum
Jan Lorenz Soliman, et al., Microbial Source Tracking by Molecular Fingerprinting (poster)
Douglas Brandt, et al., Pyroprinting Sensitivity Analysis on the GPU (poster)