This is a repository for my research, paper reading summaries/reviews, and relevant blog-like posts in markdown.

Perspectives on Bioinformatics

This blog series/section will aim to describe and detail bioinformatics from a computer science perspective and map the layers of abstraction in bioinformatics to the layers of abstraction in computer science.


The posts here will focus on the following goals:

  1. Provide an understanding of bioinformatics for my research group
  2. Explicitly describe the layers of abstraction in bioinformatics to make possible a feasible mapping to appropriate optimization tools available in database and storage systems research.


Date Type Link and Description
2019.08.05 Resources Literature context and resources
2019.08.05 Post The bioinformatics and software stacks
2019.08.05 Post Declarative Bioinformatics